Genome and gene annotation data

C. unshiu unphased genome(r1.0, Isobe S. et al. 2023 bioRxiv)

• Genome assembly (.fa.gz)
• Genome annotation (all, .gff3.gz)
• Genome annotation (primary, .gff3.gz)
• Gene functional annotation (all, .tsv.gz)
• Nucleotide exon sequences (all, .fa.gz)
• Nucleotide CDS sequences (all, .fa.gz)
• Protein sequences (all, .fa.gz)
• Nucleotide exon sequences (primary, .fa.gz)
• Nucleotide CDS sequences (primary, .fa.gz)
• Protein sequences (primary, .fa.gz)

C. unshiu (v1.0, Kawahara Y.et al. 2020 Breed Sci.)

• Genome assembly (.fa.gz)
• Genome annotation (.gff3.gz)
• Genome annotation (only Note, GO, InterPro and BLAST) (.tsv.gz)
• Nucleotide exon sequences (.fa.gz)
• Nucleotide CDS sequences (.fa.gz)
• Protein sequences (.fa.gz)
• DNA marker information (.gff.gz)

P. trifoliata (v1.0, Kawahara Y.et al. 2020 Breed Sci.)

• Genome assembly (.fa.gz)
• Genome annotation (.gff3.gz)
• Genome annotation (only Note, GO, InterPro and BLAST) (.tsv.gz)
• Nucleotide exon sequences (.fa.gz)
• Nucleotide CDS sequences (.fa.gz)
• Protein sequences (.fa.gz)

C. clementina (only MEGANTE annotation on JGI v1.0)

• Genome annotation by MEGANTE (only scaffold 1-9) (.gff3.gz)
• Genome annotation (only Note, GO, InterPro and BLAST) (.tsv.gz)
• Nucleotide exon sequences (.fa.gz)
• Nucleotide CDS sequences (.fa.gz)
• Protein sequences (.fa.gz)

Other data presented in our paper

• Gene groups among C. clementina, C. unshiu and P. trifoliata