Citrus CAPS Marker Database

Locus name (alias): Wy0062 (Wy0062.em)

CAPS PCR info

PCR Anneal-Temp (℃) / Method: 56
Main product (bp): 300
Comment on PCR: Additional band (200 bp)
F-primer: CGCCTCATCTCCATCTGACTC
R-primer: GGTTTTGAGAAGCCGAAGGAC

EST info

EST Accession number 1: DC895021
EST Accession number 2:

sequence-tagged site (STS seq)

STS:

AAGATGATTTTGCATACTGACCACGATAAGTTTGCATTTAGTATGTTAACTCAGAGCACA
ATCTTAGATGGCATACAATACAATGACGGTAGATATGATGTGCTACACAGTGAGTCATCA
ACAACAATGACTTATATGCGCCATCAACTGAATAGAAATGAAGAGAAAACAAGTTTCAGT
TCCACTTGTTTTATTTTAGGTAACCACCCATGTATTCTACCATCTAAAAATCCTACATAA
GTTCTGAGTCCCATAGTATACCGCCACCAAAGTAATCATACTATGATTATTCATGAAGTG
CAGATGATGTCAACTTTTATACATGACTGAA

STS source:
STS Forward / Reverse:

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10011305m
Scaffold: scaffold_6
Start: 15214969
End: 15222324

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00034:mRNA_76.1
Scaffold: C_unshiu_00034
Start: 634791
End: 641934
Gene function: Peptidyl-prolyl cis-trans isomerase PASTICCINO1

AGI map info (Shimada et al. 2014)

AGI LG: AGI-02
AGI cM: 78.531

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: