Citrus CAPS Marker Database

Locus name: Tf0339

CAPS PCR info

PCR Anneal-Temp (℃) / Method:
Main product (bp):
Comment on PCR: No product
F-primer: CAAGCCACGTCGAGACC
R-primer: CTACAAAGTACCCAATCATCC

EST info

EST Accession number 1: CK940145
EST Accession number 2:

sequence-tagged site (STS seq)

STS:

TTTGCAAATTATGTATGAAAATGTAGAGAAAGCTGAATTCGGGGAGAAGGAATGGTACTT
TTTCAGCCCACGAGACAGGAAGTATCCCAATGGGACGAGGCCTAACAGGGCAACTGTATC
GGGATATTGGAAGGCCACGGGGACTGATAAGGCAATATATGGTGGGTCTAAATATCTTGG
TGTCAAGAAAGCTCTTGTTTTTTATAAGGGCAGGCCCCCCAAGGGGATCAAGACTGATTG
GATCATGCATGAATATCGGCTAAATGACCCAACAAGACAACCCNACAAACATAATGGTTC
CATGAAAGTGAGCATAAATTGTGTGCATGTTTTCTCTATGANCATTAGTTAATTGTATAG
TTTAATTTTTTCAATAAAGTACTCATATTAAATCATCAATCA

STS source:
STS Forward / Reverse:

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10032304m
Scaffold: scaffold_4
Start: 24041593
End: 24043549

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00001:mRNA_158.1
Scaffold: C_unshiu_00001
Start: 1037727
End: 1039688
Gene function: NAC transcription factor NAM-B1

AGI map info (Shimada et al. 2014)

AGI LG:
AGI cM:

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1: SI019
DNA sequence around SNP1:

TTTGCAAATTATGTATGAAAATGTAGAGAAAGCTGAATTCGG[A/G]GAGAAGGAATGGT
ACTTTTTCAGCCCACGAGACAGGAAGTATCCCAATGGGACGAGGCCT

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: