Locus name: Tf0251
CAPS PCR info
PCR Anneal-Temp (℃) / Method: TdMain product (bp): 800
Comment on PCR:
F-primer: GGAAGGCATGCTGGTTGAT
R-primer: GGCTGCGATTGAACTACTGAT
EST info
EST Accession number 1: CF831040EST Accession number 2:
sequence-tagged site (STS seq)
STS:| AGCCCTCGGGTAAAGGGGGCAACTCACTATAATTATTTGAAGCTGGATGCAAGATCCTAT CTGAGCCACTCCTTTGATCAGTTTCAAAAGAACCACTTTCATCCTTTTGGTGTCCAGAAA CATCTTCCATTTCAAGTTCACCATCCACATCCTCTAAGATGCAATGACGCCTATCATTTG GAGTAACTGTGCATGTGTCTGACTCTCCTGAAGCACGTGTTTGCTCTGCTGGTGATGCAT GACCATCTTCATTAAATGTAATGCTAGGAAGATCTTCTTCTTCATCATCTTCAAATACAT GAGAAGACAAAAGGCCAGGCAACTGAAATGTAGCATTGCTGATACAATGGACAAGAGAAA ACAAATATGGCGGCAAATTAGATGCAAGCCCATTGTAAAACAGAAAAACAAATGAGTGGT GTAGCATTTTCTCTTCAACTATCAATATA |
STS Forward / Reverse:
Experiments: Restriction fragment profile
Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)Comment:
Figure legend:
 |
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Target on C. clementina (v1.0)
Transcript ID:Scaffold:
Start:
End:
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00039:mRNA_19.1Scaffold: C_unshiu_00039
Start: 154778
End: 176393
Gene function: Enhancer OF AG-4-like protein, putative
AGI map info (Shimada et al. 2014)
AGI LG:AGI cM:
KmMg map info (Omura et al. 2003)
KmMg LG:KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1: SI005DNA sequence around SNP1:
| GCACGTGTTTGCTCTGCTGGTGATGCATGACCATCTTC[A/G]TTAAATGTAATGCTAGG AAGATCTTCTTCTTCATCATCTTCAAATACATGAGAAGACAAA |
DNA sequence around SNP2:
DNA sequence around SNP3:
DNA sequence around SNP4: