Citrus CAPS Marker Database

Locus name: Af1457

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 900
Comment on PCR:
F-primer: TATATGTCAAGGCTCCTTCGT
R-primer: GCCCATAGGTACCCTG

EST info

EST Accession number 1: AB114659
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
CACAGATTGCCACCATTTTGTGCTTGAGGTATTTTATTGTTTTGTTTTAATTTTTTGAAT
ACAAAATCGATTTCTGTAGCAGTTATGAATGCGTTTAATTAAGCAGAACTATTGTACCAT
GTACGATTTATTTGCTTCCTTGATTTCTTAGGATGACTGGAACAGACTGGAGGAGCCTTA
TGGAAGTATATTTTTAAGCATTCCAACGGTTCTTGATTCATCTTTGGCTCCAGAGGGGCA
CCATATTCTTCACATATTTACAATTTGTTCCATAGAGGACTGGGAGGTAAGTAGAATACA
ACAACTAAATTTTGAAAGTGCCTCAGATTACCTTTACTTTATTTTTCCAGCTCTCTTTCT
AGCATTGTACTCAGGTGTACGAAGATGATTTATGAATTTAAAGTAAAGCTGATGTAAATT
TTTACGGATTAGGGACTGGCTCAAAAGGACTATGATGCAAAGAAGGAGCTTGTGGCAGAT
GAAATAATCAATAGACTGGAGAACAAACTGTTTCCAGGGCTTAAACAATCAATTGCTTTT
AGGGAGGTATGATTCATATGCAGATAACATTGGACAGTTTTGATTACCAATTTGATGTTA
A
STS source: Clementine haploid
STS Forward / Reverse: Combined sequence of both reads
STS:
CACAGATTGCCACCATTTTGTGCTTGAGGTATTTTATTGTTTTGTTTTAATTTTTTGAAT
ACAAAATCGATTTCTGTAGCAGTTATGAATGCGTTTAATTAAGCAGAACTATTGTACCAT
GTACGATTTATTTGCTTCCTTGATTTCTTAGGATGACTGGAACAGACTGGAGGAGCCTTA
TGGAAGTATATTTTTAAGCATTCCAACGGTTCTTGATTCATCTTTGGCTCCAGAGGGGCA
CCATATTCTTCACATATTTACAATTTGTTCCATAGAGGACTGGGAGGTAAGTAGAATACA
ACAACTAAATTTTGAAAGTGCCTCAGATTACCTTTACTTTATTTTTCCAGCTCTCTTTCT
AGCATTGTACTCAGGTGTACGAAGATGATTTATGAATTTAAAGTAAAGCTGATGTAAATT
TTTACGG
STS source: Chuukanbohon NO 5
STS Forward / Reverse: Foward read
STS:
TTACGTTGTCCGATGAAATACATTAGGAACTAAAGGTTGTGAACAGAAATTAGAGTTCTT
TAATGGTAACTTTTGCCTGCCCTGCCGGGGCCAAAGCTGATCCAAATTGGGCAGGTATGA
TCCAAAAATAACTGGTCAAAGTTTATGGGATTTTATTGTGGTGACCAGTGTTTAAGCCTC
ATAAAATCCATAAACT
STS source: Chuukanbohon NO 5
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)
Comment:
Figure legend:

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10011230m
Scaffold: scaffold_6
Start: 19578179
End: 19583475

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)