Citrus CAPS Marker Database

Locus name: Af1400

CAPS PCR info

PCR Anneal-Temp (℃) / Method:
Main product (bp):
Comment on PCR: No product
F-primer: ATGACAATGTGGGATGTGATA
R-primer: AAATGATATTCAACGAGGT

EST info

EST Accession number 1: CX044724
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
GTAAGAGAAGAAAATATTAGTTGCATCAAGAAAGCTGCAAAGATTTAAAAACCATACTCA
AGCAAACATATATACGTAAACATAGTTAGTAATAAAATCGATGATTGGTAATACATGACA
ATAAATAAT
STS source: Miyagawa wase (unshiu)
STS Forward / Reverse: Foward read
STS:
TATAGTGCACTGGAAATGTAAATGGAGGGAACATATATGAACCTAAATGTAGTTTTGTAT
CCCCAAAACCAACACGATTGAGCCCCCGAGATGGTAGCGTCGTGGAAGATGAAGAAGATT
ATTTAGATTTGCTCTTTTTGCCAGCTCAGCCAGCTCCAAAACTTTGGTGTCGGGTAAATT
TCTGCACATGCCTACAATATACTTTCCCCTAATGCTAACGTGAGGCAGTTACCTACCTTA
AGTTTTTTGTTGAACTGTTTAATTAATACAATATTAGAGCAAATGGCTCACGATCAATTC
TTTCAGCCAACAGTTTGGAAGATAGTCGAAATTTATTAGGGATAAATAAAAATTAATCCT
AAAAGGAATCAATTAAATTTAGAATTCCTCTTTTATATTTATATGAGTGTATTGAATATT
G
STS source: Miyagawa wase (unshiu)
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10024198m
Scaffold: scaffold_3
Start: 30042140
End: 30047495

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)