Citrus CAPS Marker Database

Locus name: Af1346

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 1800
Comment on PCR:
F-primer: TTCTGGTTCTTCGATTTT
R-primer: TCATCAGTTGTAAGTCTCGAT

EST info

EST Accession number 1: CX051829
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
CATTCTCTCTTTCTATTATCTGATTCGTTAATCGTTATTATATCAAAATCGTAATTTTTG
GAACTTTCCTTGGCGTTTTCAGTGAACAGCCAGACGATTTTTAAAAATTAATAAAAATTA
ATATTTGGTGAACATATAATGTACAACTGATTTATATAATTATTGGGAAAAATGAACTTG
AGGTCATGATTGATAAATGGAAATGAATTGAAAAAATAAAATCTTTTCTTCTATTGTGGT
TTGATTAAAAAATAAAACTGATTTTTATTTTTATTTTTTGTGACTCTGATGTTGTGATGT
ATTCTATGTGCGTTGTTGCAAGTTGCAACTATTGCCTGGTTTGGGTGTTGAAAATTTAAT
GTGGTTATCTTTCAACGTCAAATGATATGAATGATGAATTTCTTCTTGCATGATTGCTGG
TAAAGTCATGGTTTTGTGAACG
STS source: Chuukanbohon NO 5
STS Forward / Reverse: Foward read
STS:
CCTAGGGGGTTGTATCTTTGTGGTGCATACTATCTGAAACTAGGATTACAAGCAGAAAGA
ACTGAGTTCAGATTTTTGTTAGCCAACTGAAATATTGATAAACTGCAGCATTTTCTAAAA
GAGAAATTATTGCACTCTTATGTGTTTGACCAAGTCACCAACGTCTCAAACACTTTAGAG
CTATCAAAATCCTCAATATAAATATATATAGGTATCCACTATACATATATTAACAACATA
ATCCATTTTGCAGAAACAGATGGCCACCAAGTGCTTCCAAACACATAAATGTTGTGGATC
GTGATCTTAAGATCTAGCTAGTTGAGCCTTCTTTGCCCACTTCCTTCCCCACCCCAACCC
STS source: Okitsu 46
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10013045m
Scaffold: scaffold_6
Start: 13547529
End: 13550344

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)