Citrus CAPS Marker Database

Locus name: Af1254

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 900
Comment on PCR:
F-primer: GTGATCACAATTTTGACCCTA
R-primer: TTTGAGATGTTACAAGGC

EST info

EST Accession number 1: CX070853
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
TATACTCTAAAATTTTGCTTATGTGCTTCAGCTAGATTCTTATTCTTCTGGTTGCTCTTG
CTCAGGTAAATGAAGAACTGGGAAACATATACCCTCTCTTCAATGAACGTCCAGGTAGTG
GAAATGCAATAGAAAGGGTACTGGCTTTGGAAATTGAGCTTGCTGAAGCATTGCAAGCAA
AGAAGAAATCAAGCATGCATTTTCAGAGGTGTGTAATTGCTAAGATTTGTTTCTCAAGAC
CCTTCCTTTATAAATTAGTTCTGTGTATAATGTGAATGGAGGAATATGTTTTAACTGTTG
CATGACATTCTCCTCGTGTGGTTCAGCTCATTTTTGAAACAACACAATGACGAGGAAGCT
ATTTTCCAAAGCTTTAGAGATATCAACGAGCTAATTAAAGACATGTTGGAAATAAAGGGG
AGGTATGCAACCGTCGAGACTGAACTAAGAGATATGCATGACCGTTACTCTCAGTTAAGT
CTCCAATTTGCAGAAGTTGAGGGAGAGAGACAGAAACTCATGATGACACTCAAGAATGTC
CGGGCATCCAAGAG
STS source: Okitsu 46
STS Forward / Reverse: Foward read
STS:
ACATCTCAACCAAGCTTGAAAAATTTGACCCATGATCTTTGATCACCGTATCATAAATTA
ACAATGTGGGCGGCGAGGCAGTGTGGGATGTCAACATCTGATCTCAGGTATGATTTTCAG
GAAAAAGCAAACGAGAACTACTGTGAATTTGTTACTGGGCTCTTGGAGTCTCCAAGGGAT
GCTGACGAGGAGAGAAACAGTGGAATCCCTCTCTTGGATGCCCGGACATTCTTGAGTGTC
ATCATGAGTTTCTGTCTCTCTCCCTCAACTTCTGCAAATTGGAGACTTAACTGAGAGTAA
CGGTCATGCATATCTCTTAGTTCAGTCTCGACGGTTGCATACCTCCCCTTTATTTCCAAC
ATGTCTTTAATTAGCTCGTTGATATCTCTAAAGCTTTGGAAAATAGCTTCCTCGTCATTG
TGTTGTTTCAAAAATGAGCTGAACCACACGAGGAGAATGTCATGCAACAGTTAAAACATA
TTCCTCCATTCACATTATA
STS source: Okitsu 46
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10003301m
Scaffold: scaffold_5
Start: 36751453
End: 36759896

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)