Citrus CAPS Marker Database

Locus name: Af1236

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 1600
Comment on PCR:
F-primer: GAAATCATAGAAGCCGAGAG
R-primer: GAATTTACTCCCGAGGATAGA

EST info

EST Accession number 1: CV885477
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
CAATTACTCTTTACATTATGATAATTATGCTGAAATGTTATATCTGTTTGCATATCCTGA
TTATTGTTTTATTGCCATTTTGTTTAAATGTTTTATCTCTTGGTTGGTCCTTTATTTGTG
TATCCTCTCTAGGGAAACTAATTTTTATCATAAGCTTTTATTATTAATTCCATTTGCAGT
TTTGCTCTCAATTCTGGTAATCTTTGAACTATATAAGACTTTTAACAGCCTGTTTGGAAT
TATAAGTTACTTAGACAATTCACAGTGTGAGTTATGATGTTCTCAATCATCATGATGTCT
TCATTCAGAATTTTGTTAGCGTATATTAGACATTTGTCTTAGCATTAGGTCTTGCAGGTA
GATGTGGTTTTATAACAGGAAATGAGTTCTTCTGTCTACCT
STS source: Clementine
STS Forward / Reverse: Foward read
STS:
ATGGACCCTATCACTATTCTATGAGAAGAAATTCAATAGGTATTTCTTAAACTTAAAGGA
TAATATTGATTGACATAGAATAAGACAGATATTGTCAACCCAATTGGGCTTTGGAGATCA
AACCATACAGGAGAAAGTGTTGTGGACACCAGAAGATCGTGAAATAAAATCATTGAGTAG
CAAGATGAGTTCCCAGCACAAGAATCCAGTACACTGACAAGTGACTGCAAATATCAAATT
TAATAATCAGAACTATTAACCAGCAAGAAAATAAACAATGTTTCACTTATAAGCCATAAG
ATTACAATTTGTATCATGTTAACACACACCGTTATGCTTCA
STS source: Okitsu 46
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10015450m
Scaffold: scaffold_2
Start: 26852381
End: 26857537

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)