Citrus CAPS Marker Database

Locus name: Af1234

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 500
Comment on PCR:
F-primer: AAGGAAATACAAACTGCGTAG
R-primer: ATTCAGGCGTGCTTGA

EST info

EST Accession number 1: CX671832
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
GTGGGCAATTCTCAGTAAAATCCGATGTCTTCAGCTTTGGAATTTTATTGCTGGAGATAA
TAAGTGGAAAGAAAAATAGAGGATTTTATCATTCCGACAACAAGCTTAACCTTATAGGAC
ATGTAAGTAAAATGCATACGACATTTTCTAACATAGTTTGAACTAATAAAATATAGATGA
TAAAAGAGTTTTAATATGTTGTAGGCATGGAAGTTGTGGAACGAAGGCATGCCTTCACAA
TTAATCGATCCGTGTATTCAAGACTCATTCAATCTTGCTGAAGTGATACGATGCATCCAC
ATCGGTTTGTTATGCGTGCAACAGCATCCAAAGGACATGCCAAGCATGCCCTCAGTGATT
T
STS source: Clementine haploid
STS Forward / Reverse: Foward read
STS:
ATGTGGATGCATCGTATCACTTCAGCAAGATTGAATGAGCCTTGAATACACGGATCGATT
AATTGTGAAGGCATGCCTTCGTTCCACAACTTCCATGCCTACAACATATTAAAACTCTTT
TATCATCTATATTTTATTAGTTCAAACTATGTTAGAAAATGTCGTATGCATTTTACTTAC
ATGTCCTATAAGGTTAAGCTTGTTGTCGGAATGATAAAATCCTCTATTTTTCTTTCCACT
TATTATCTCCAGCAATAAAATTCCAAAGCTGAAGACATCGGA
STS source: Clementine haploid
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10007572m
Scaffold: scaffold_1
Start: 19975332
End: 19979144

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)