Citrus CAPS Marker Database

Locus name: Af1221

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 1200
Comment on PCR:
F-primer: ATACGAGGTGGCCTGATTAT
R-primer: GCCCTATATCGAGAACGTGTT

EST info

EST Accession number 1: CN186350
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
TTCGTAATCTGCATACACAGATTTCCATAATTGAATAAAAATATGAAGTGAATAAAAATG
ATGTTTTGCATAGTGTTAAAAATATATCAAAGACAAGAAAGTCACACACAAATCTTTGTC
AAAATTGTGCCAAAAAGTTCATCATAGTTCAACATGAGAAAAAATGGAACTTACTGACAG
CCTGCAATTAAAACGGTAACTGATGTGCTTGCTCATCATTCAGTAACCCATGAAACATTA
TAAAAATCAGCTTTTGGCACACTCACCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAAC
TCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCA
G
STS source: Clementine haploid
STS Forward / Reverse: Foward read
STS:
CCAAAAGGGTTTATATGTACATCAACGGTCCTGGTGGGGATGTAAGTTCTAATAAATCAA
GATTTTGCAGTTGACTTCCTAATTCTTTCTTATTTTCCTGTTGCTTATATCATGGTACTA
TGCTGCTGAAAACTGGCTCTGGTTCCAGGTTACTCCCACCTTGGCAATTTACGACACTAT
GCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTATCATTTAGCAGG
GTTTCTTCTAGCAGGTGGAGAAAAGGTAATGGCTATTTTTCTTCTCCATGGGAATCAGAG
TTGACAAAAATTTTGTGGTTCCATCTCTCATAAGAGAGATG
STS source: Clementine haploid
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10022216m
Scaffold: scaffold_3
Start: 6329133
End: 6332201

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)